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Public Member Functions | Protected Member Functions | Protected Attributes | Package Functions | Package Attributes | Private Member Functions

jalview::gui::PopupMenu Class Reference

Inheritance diagram for jalview::gui::PopupMenu:
Inheritance graph
Collaboration diagram for jalview::gui::PopupMenu:
Collaboration graph

List of all members.

Public Member Functions

void annotationMenuItem_actionPerformed (ActionEvent actionEvent)
void colourByStructure (String pdbid)
void copy_actionPerformed ()
void cut_actionPerformed ()
void discoverPDB_actionPerformed ()
void editSequence_actionPerformed (ActionEvent actionEvent)
void enterPDB_actionPerformed ()
void nucleotideMenuItem_actionPerformed ()
void outputText_actionPerformed (ActionEvent e)
void pdbFromFile_actionPerformed ()
 PopupMenu (final AlignmentPanel ap, Sequence seq, Vector links, Vector groupLinks)
 PopupMenu (final AlignmentPanel ap, Sequence seq, Vector links)
void sequenceFeature_actionPerformed ()
void showBoxes_actionPerformed ()
void showColourText_actionPerformed ()
void showLink (String url)
void showText_actionPerformed ()
void textColour_actionPerformed ()

Protected Member Functions

void abovePIDColour_actionPerformed ()
void BLOSUM62Colour_actionPerformed ()
void buriedColour_actionPerformed ()
void clustalColour_actionPerformed ()
void conservationMenuItem_actionPerformed ()
void groupName_actionPerformed ()
void helixColour_actionPerformed ()
void hydrophobicityColour_actionPerformed ()
void noColourmenuItem_actionPerformed ()
void outline_actionPerformed ()
void PIDColour_actionPerformed ()
void showNonconserved_actionPerformed ()
void strandColour_actionPerformed ()
void taylorColour_actionPerformed ()
void turnColour_actionPerformed ()
void userDefinedColour_actionPerformed (ActionEvent e)
void zappoColour_actionPerformed ()

Protected Attributes

JCheckBoxMenuItem abovePIDColour = new JCheckBoxMenuItem()
JRadioButtonMenuItem BLOSUM62Colour = new JRadioButtonMenuItem()
JRadioButtonMenuItem buriedColour = new JRadioButtonMenuItem()
JRadioButtonMenuItem clustalColour = new JRadioButtonMenuItem()
JCheckBoxMenuItem conservationMenuItem = new JCheckBoxMenuItem()
JRadioButtonMenuItem helixColour = new JRadioButtonMenuItem()
JRadioButtonMenuItem hydrophobicityColour = new JRadioButtonMenuItem()
JRadioButtonMenuItem PIDColour = new JRadioButtonMenuItem()
JRadioButtonMenuItem strandColour = new JRadioButtonMenuItem()
JRadioButtonMenuItem taylorColour = new JRadioButtonMenuItem()
JRadioButtonMenuItem turnColour = new JRadioButtonMenuItem()
JRadioButtonMenuItem userDefinedColour = new JRadioButtonMenuItem()
JRadioButtonMenuItem zappoColour = new JRadioButtonMenuItem()

Package Functions

void changeCase (ActionEvent e)
SequenceGroup getGroup ()
void hideSequences (boolean representGroup)
void refresh ()
void sequenceName_actionPerformed ()
void unGroupMenuItem_actionPerformed ()

Package Attributes

AlignmentPanel ap
JMenu colourMenu = new JMenu()
JMenuItem copy = new JMenuItem()
JMenuItem cut = new JMenuItem()
JMenuItem discoverPDB = new JMenuItem()
JCheckBoxMenuItem displayNonconserved = new JCheckBoxMenuItem()
JMenu editMenu = new JMenu()
JMenuItem editSequence = new JMenuItem()
JMenuItem enterPDB = new JMenuItem()
JMenu groupLinksMenu
JMenu groupMenu = new JMenu()
JMenuItem groupName = new JMenuItem()
JMenu jMenu1 = new JMenu()
JMenuItem lowerCase = new JMenuItem()
JRadioButtonMenuItem noColourmenuItem = new JRadioButtonMenuItem()
JRadioButtonMenuItem nucleotideMenuItem = new JRadioButtonMenuItem()
JMenuItem outline = new JMenuItem()
JMenu outputMenu = new JMenu()
JMenuItem pdbFromFile = new JMenuItem()
JMenu pdbMenu = new JMenu()
Sequence sequence
JMenuItem sequenceFeature = new JMenuItem()
JMenu sequenceMenu = new JMenu()
JMenuItem sequenceName = new JMenuItem()
JCheckBoxMenuItem showBoxes = new JCheckBoxMenuItem()
JCheckBoxMenuItem showColourText = new JCheckBoxMenuItem()
JCheckBoxMenuItem showText = new JCheckBoxMenuItem()
JMenu structureMenu = new JMenu()
JMenuItem textColour = new JMenuItem()
JMenuItem toggle = new JMenuItem()
JMenuItem unGroupMenuItem = new JMenuItem()
JMenuItem upperCase = new JMenuItem()
JMenu viewStructureMenu = new JMenu()

Private Member Functions

void addshowLink (JMenu linkMenu, String label, final String url)
void addshowLink (JMenu linkMenu, String label, final GroupUrlLink urlgenerator, final Object[] urlstub)
void buildGroupURLMenu (SequenceGroup sg, Vector groupLinks)
void jbInit () throws Exception

Detailed Description



Definition at line 43 of file PopupMenu.java.

The documentation for this class was generated from the following file:

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